====== Mouse HCD Library  ======
===== Nov. 24, 2014=====
This library was compiled entirely from data contributed by the University of North Carolina to the CPTAC consortioum. The mouse HCD library was created in part from raw data stored on the Clinical Proteomic Tumor Analysis Consortium (CPTAC) data portal [[https://cptac-data-portal.georgetown.edu/cptacPublic/]]. 

{{page>peptidew:lib:newfiles_warning}}

<WRAP center group 90%>
^ File - Description ^ Size ^ Link ^
| **cptac2_mouse_hcd_selected.msp.tar.gz** - Consensus library in plain ASCII text (msp format). This format can be used as an exchange format. It is also directly readable by some software applications, including Skyline, after unzipping. |  60MB| [[https://chemdata.nist.gov/download/peptide_library/libraries/cptaclib/2015/cptac2_mouse_hcd_selected.msp.tar.gz|Download]] |
| **cptac2_mouse_hcd_selected.tar.gz** - Consensus library in NIST binary format. The folder generated by extracting this package can be used directly by [[peptidew:mspepsearch|MS Search or MSPepSearch]]and by the MSPepSearch node within Proteome Discoverer. |  104MB| [[https://chemdata.nist.gov/download/peptide_library/libraries/cptaclib/2015/cptac2_mouse_hcd_selected.tar.gz|Download]] | 
| **20111201-RefSeq-Human-37-Mouse-37-Trypsin.fasta.tar.gz** - FASTA file used to search CompRef human-mouse xenograft samples.|16.2MB|[[https://chemdata.nist.gov/download/peptide_library/libraries/cptaclib/2015/20111201_RefSeq_Human_37-Mouse_37_Trypsin.fasta.tar.gz|Download]]|
| **md5_checklist.chk** - MD5 hash file. |  1KB| [[https://chemdata.nist.gov/download/peptide_library/libraries/cptaclib/2015/md5_checklist.chk|Download]] | 
 
</WRAP>

  * Total number of Spectra: **17,851**
  * Unique Peptide Sequences: **10,026**
  * Total Proteins in FASTA file used: **62,417**
  


{{page>pepcopyright}}