====== Mouse HCD iTRAQ Library  ======
===== Nov. 24, 2014=====

The mouse HCD iTRAQ-4 library was created entirely from raw data stored on the Clinical Proteomic Tumor Analysis Consortium (CPTAC) data portal[[https://cptac-data-portal.georgetown.edu/cptacPublic/]].  Contributing laboratories were the Broad Institute, Johns Hopkins University and Pacific Northwest National Laboratory.

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<WRAP center group 90%>
^ File - Description ^ Size ^ Link ^
| **cptac2_mouse_hcd_itraq_selected.msp.tar.gz** - Consensus library in plain ASCII text (msp format). This format can be used as an exchange format. It is also directly readable by some software applications, including Skyline, after unzipping. |  350MB| [[https://chemdata.nist.gov/download/peptide_library/libraries/cptaclib/2015/cptac2_mouse_hcd_itraq_selected.msp.tar.gz|Download]] |
| **cptac2_mouse_hcd_itraq_selected.tar.gz** - Consensus library in NIST binary format. The folder generated by extracting this package can be used directly by [[peptidew:mspepsearch|MS Search or MSPepSearch]] and by the MSPepSearch node within Proteome Discoverer. |  600MB| [[https://chemdata.nist.gov/download/peptide_library/libraries/cptaclib/2015/cptac2_mouse_hcd_itraq_selected.tar.gz|Download]] | 
| **20111201-RefSeq-Human-37-Mouse-37-Trypsin.fasta.tar.gz** - FASTA file used to search CompRef human-mouse xenograft samples.|16.2MB|[[https://chemdata.nist.gov/download/peptide_library/libraries/cptaclib/2015/20111201_RefSeq_Human_37-Mouse_37_Trypsin.fasta.tar.gz|Download]]|
| **md5_checklist.chk** - MD5 hash file. |  1KB| [[https://chemdata.nist.gov/download/peptide_library/libraries/cptaclib/2015/md5_checklist.chk|Download]] | 
  
</WRAP>

  * Total number of Spectra: **91,068**
  * Unique Peptide Sequences: **42,095**
  * Total Proteins in FASTA file used: **62,417**



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