====== Rat Ion Trap Library  ======
=====  May 30, 2013 =====

This library was assembled from data contributed by many laboratories. Each library entry contains annotation specifying its origin. Additionally, a summary table of the many contributors to this library, including references, can be downloaded [[https://chemdata.nist.gov/download/peptide_library/libraries/rat/ION_TRAP/2013_05_30/rat_it_annotation_lib2013.xlsx|here]] (Excel file).

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<WRAP center group 90%>
^ File - Description ^ Size ^ Link ^
| **2013_05_30_rat_consensus_final_true_lib.tar.gz** - Consensus library in plain ASCII text (msp format). This format can be used as an exchange format. It is also directly readable by some software applications, including Skyline, after unzipping. |  121MB | [[https://chemdata.nist.gov/download/peptide_library/libraries/rat/ION_TRAP/2013_05_30/2013_05_30_rat_consensus_final_true_lib.tar.gz|Download]] | 
| **2013_05_30_rat_nist.tar.gz** - Consensus library in NIST binary format. The folder generated by extracting this package can be used directly by [[peptidew:mspepsearch|MS Search or MSPepSearch]] and by the MSPepSearch node within Proteome Discoverer. |  233MB | [[https://chemdata.nist.gov/download/peptide_library/libraries/rat/ION_TRAP/2013_05_30/2013_05_30_rat_nist.tar.gz|Download]] | 
| **2013_05_30_rat_spectrast.tar.gz** - Consensus library in SpectraST format.  These library files can be directly searched by SpectraST after the package is extracted. |  288MB | [[https://chemdata.nist.gov/download/peptide_library/libraries/rat/ION_TRAP/2013_05_30/2013_05_30_rat_spectrast.tar.gz|Download]] |
| **rat_fasta.tar.gz** - FASTA file used to create the library. |  8MB | [[https://chemdata.nist.gov/download/peptide_library/libraries/rat/ION_TRAP/2013_05_30/rat_fasta.tar.gz|Download]] |
| **README.txt** - Readme file.|  4MB |[[https://chemdata.nist.gov/download/peptide_library/libraries/rat/ION_TRAP/2013_05_30/README.txt|Download]]|
| **md5_checklist.chk** - MD5 hash file. |  1KB | [[https://chemdata.nist.gov/download/peptide_library/libraries/rat/ION_TRAP/2013_05_30/md5_checklist.chk|Download]] | 
 
</WRAP>

  * Total number of Spectra: **61,707**
  * Unique Peptide Sequences: **42,167**
  * Total Proteins in FASTA file used: **27,780**
  * Proteome Coverage: **6.64%**

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