====== Human HCD Library======
===== Nov. 24, 2014=====
 
The human HCD library was created entirely from raw data stored on the Clinical Proteomic Tumor Analysis Consortium (CPTAC) data portal [[https://cptac-data-portal.georgetown.edu/cptacPublic/]]. This library was compiled from data contributed by the University of North Carolina from the analysis of human tumor-mouse xenograft tissues.  

<WRAP center group 90%>
^ File - Description ^ Size ^ Link ^
| **cptac2_human_hcd_selected.msp.tar.gz** - Consensus library in plain ASCII text (msp format). This format can be used as an exchange format. It is also directly readable by some software applications, including Skyline, after unzipping. |  590MB| [[https://chemdata.nist.gov/download/peptide_library/libraries/cptaclib/2015/cptac2_human_hcd_selected.msp.tar.gz|Download]] |
| **cptac2_human_hcd_selected.tar.gz** - Consensus library in NIST binary format. The folder generated by extracting this package can be used directly by [[peptidew:mspepsearch|MS Search or MSPepSearch]] and by the MSPepSearch node within Proteome Discoverer. |  1.0GB| [[https://chemdata.nist.gov/download/peptide_library/libraries/cptaclib/2015/cptac2_human_hcd_selected.tar.gz|Download]] | 
| **20111201-RefSeq-Human-37-Mouse-37-Trypsin.fasta.tar.gz** - FASTA file used to search CompRef human-mouse xenograft samples.|16.2MB|[[https://chemdata.nist.gov/download/peptide_library/libraries/cptaclib/2015/20111201_RefSeq_Human_37-Mouse_37_Trypsin.fasta.tar.gz|Download]]|
| **md5_checklist.chk** - MD5 hash file. |  1KB| [[https://chemdata.nist.gov/download/peptide_library/libraries/cptaclib/2015/md5_checklist.chk|Download]] | 
 
</WRAP>
 
 * Total number of Spectra: **183,140**\\
 *  Unique Peptide Sequences: **92,409**\\
 *  Total Proteins in FASTA file used: **62,417**

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