======  Rat Collision Cell (QTOF) Library  ======
=====  June 05, 2013 =====
This library was assembled from data contributed by many laboratories. Each library entry contains annotation specifying its origin. Additionally, a summary table of the many contributors to this library, including references, can be downloaded [[https://chemdata.nist.gov/download/peptide_library/libraries/rat/QTOF/2013_06_05/rat_qtof_annotation_lib2013.xlsx|here]] (Excel file).

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^ File - Description ^ Size ^ Link ^
| **2013_06_05_rat_qtof_consensus_final_true_lib.tar.gz** - Consensus library in plain ASCII text (msp format). This format can be used as an exchange format. It is also directly readable by some software applications, including Skyline, after unzipping. |  21MB | [[https://chemdata.nist.gov/download/peptide_library/libraries/rat/QTOF/2013_06_05/2013_06_05_rat_qtof_consensus_final_true_lib.tar.gz|Download]] | 
| **2013_06_05_rat_qtof_nist.tar.gz** - Consensus library in NIST binary format. The folder generated by extracting this package can be used directly by [[peptidew:mspepsearch|MS Search or MSPepSearch]] and by the MSPepSearch node within Proteome Discoverer. |  45MB | [[https://chemdata.nist.gov/download/peptide_library/libraries/rat/QTOF/2013_06_05/2013_06_05_rat_qtof_nist.tar.gz|Download]] | 
| **2013_06_05_rat_qtof_spectrast.tar.gz** - Consensus library in SpectraST format.  These library files can be directly searched by SpectraST after the package is extracted. |  52MB | [[https://chemdata.nist.gov/download/peptide_library/libraries/rat/QTOF/2013_06_05/2013_06_05_rat_qtof_spectrast.tar.gz|Download]] |
| **rat_fasta.tar.gz** - FASTA file used to create the library. |  8MB | [[https://chemdata.nist.gov/download/peptide_library/libraries/rat/QTOF/2013_06_05/rat_fasta.tar.gz|Download]] | 
| **README.txt** - Readme file.|  4MB |[[https://chemdata.nist.gov/download/peptide_library/libraries/rat/QTOF/2013_06_05/README.txt|Download]]|
| **md5_checklist.chk** - MD5 hash file. |  1KB | [[https://chemdata.nist.gov/download/peptide_library/libraries/rat/QTOF/2013_06_05/md5_checklist.chk|Download]] | 

</WRAP>

  * Total number of Spectra: **23,513**
  * Unique Peptide Sequences: **19,465**
  * Total Proteins in FASTA file used: **27,780**
  * Proteome Coverage: **0%**

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