chemdata:start
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chemdata:start [2014/03/06 10:56] admin [Other Products and Services] |
chemdata:start [2020/06/29 17:24] (current) |
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| - | This site provides information and access to NIST mass spectral data products. A variety of data products are available, including EI and tandem MS libraries (small molecule and peptide), a GC retention index collection as well as certain freely available, specialized spectral libraries. Freely available data analysis tools include AMDIS (Automated Mass Spectral Deconvolution and Identification System for GC/MS), the Mass Spectrum Interpreter (connects chemical structures with mass spectra), and the Mass Spectral Digitizer Program. Also available is a fully functional, version of NIST MS Search Program v.2.0f with a small demonstration library. | + | {{:chemdata:msdatacenter_ani.gif?nolink& }}This site provides information and access to NIST mass spectral data products. A variety of data products are available, including EI and tandem MS libraries (small molecule and peptide), a GC retention index collection as well as certain freely available, specialized spectral libraries. Freely available data analysis tools include AMDIS (Automated Mass Spectral Deconvolution and Identification System for GC/MS), the Mass Spectrum Interpreter (connects chemical structures with mass spectra), and the Mass Spectral Digitizer Program. Also available is a fully functional, version of NIST MS Search Program v.2.3 with a small demonstration library. |
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| - | * [[http://www.nist.gov/srd/nist1a.cfm|NIST/EPA/NIH Mass Spectral Database]] – The product of a multiyear, comprehensive evaluation and expansion of the world's most widely used mass spectral reference library of electron ionization spectra. | + | * <color red>**ANNOUNCEMENT**</color> - [[https://www.nist.gov/programs-projects/nist20-updates-nist-tandem-and-electron-ionization-spectral-libraries|2020 Release of the NIST EI and Tandem Libraries]]. |
| - | * [[http://peptide.nist.gov/|NIST Peptide Databases]] – Nearly 1 million MS/MS Spectra for multiple biological species | + | * NIST EI Library {{:chemdata:2020-nist_ei_library.pdf| flyer}} |
| - | * [[:chemdata:msms12|NIST 12 MS/MS Database]]- Library of tandem mass spectra for both ion-trap and variable-energy collision cell fragmentation | + | * NIST Tandem Library {{:chemdata:2020-nist_tandem_library.pdf| flyer}} |
| - | * [[:chemdata:ridatabase|NIST 11 GC Method / Retention Index Database]]- Extensive collection of GC retention indices with method information | + | |
| + | * [[:chemdata:nistlibs|NIST Libraries and software]] - For Users of NIST Libraries and Software | ||
| + | * [[https://chemdata.nist.gov/srmd-1953-glycan/spectra|Milk SRM/D 1953 Tandem MS library]] - On-Line library of 469 positive and negative MS2 spectra of 74 oligosaccharides derived from human milk NIST reference material. | ||
| + | * [[http://chemdata.nist.gov/glycan/|On-Line Glycan MS/MS Library]] - Web version of the NIST Glycan Mass Spectral Reference Library | ||
| + | * [[http://peptide.nist.gov/|NIST Peptide MS Libraries]] – Nearly 3.8 million MS/MS Spectra for multiple biological species | ||
| + | * [[:chemdata:msms|NIST 20 Tandem MS Library]]- Library of tandem mass spectra for both ion-trap and variable-energy collision cell fragmentation | ||
| + | * [[:chemdata:ridatabase|NIST 17 GC Method / Retention Index MS Library]]- Extensive collection of GC retention indices with method information | ||
| * [[:chemdata:epatandem-library|EPA Tandem Mass Spectrometry Library]] – Starter library of environmentally relevant compounds | * [[:chemdata:epatandem-library|EPA Tandem Mass Spectrometry Library]] – Starter library of environmentally relevant compounds | ||
| * [[:chemdata:dart-library|DART Forensics Library]] – A library of in-source fragmentation spectra of DART-generated ions | * [[:chemdata:dart-library|DART Forensics Library]] – A library of in-source fragmentation spectra of DART-generated ions | ||
| + | * [[:chemdata:glycan-library|Glycan MS/MS Library]] – A library of 209 glycans (includes MS Search software and 16,421 glycan spectra extracted from the NIST 17 Tandem Library) | ||
| + | * [[:chemdata:arus|ARUS]] - Annotated Recurrent Unidentified Spectra (ARUS ) Libraries for Analysis | ||
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| ===== Tools ===== | ===== Tools ===== | ||
| - | * [[:chemdata:ms-search|NIST MS Search Program]] - what's new, software updates, demo, documentation and support programs. | + | * [[:chemdata:interpreter|Mass Spectrum Interpreter]] – <color red>Major New Release – February 2019 (v. 3.4). </color>Information and downloads for version 3.4 of this program which connects mass spectral peaks to their probable chemical structure origin (EI and MS/MS, both nominal and accurate mass). |
| - | * [[:chemdata:amdis|AMDIS]] – computer program that extracts spectra for individual components in a GC/MS data file | + | * [[:chemdata:nist17|NIST MS Software and Data]] - updates, demo, documentation, MSPepSearch, Lib2NIST, RUS libraries and support programs. |
| - | * [[:chemdata:interpreter|Mass Spectrum Interpreter]] – information and downloads for version 2 of this program which predicts fragmentation based on structures and correlates with mass spectra (EI and MS/MS) | + | * [[:chemdata:amdis|AMDIS]] – computer program that extracts spectra for individual components in a GC/MS data file (Instructions for using AMDIS with MS Search – <color red>11-25-2019</color>) |
| * [[:chemdata:digitizer|Mass Spectrum Digitizer Program]] – a tutorial on how to use the program (includes program download) that allows the digitization of graphical spectra | * [[:chemdata:digitizer|Mass Spectrum Digitizer Program]] – a tutorial on how to use the program (includes program download) that allows the digitization of graphical spectra | ||
| * [[:chemdata:glycocalc|The NIST Glyco Mass Calculator]] - a tool to aid in the analysis of glycoforms | * [[:chemdata:glycocalc|The NIST Glyco Mass Calculator]] - a tool to aid in the analysis of glycoforms | ||
| + | * [[:chemdata:dimedr|DIMEDR]] - A Novel Algorithm for Agglomerating Incongruent LC-MS Metabolomics Datasets. | ||
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| - | * [[http://www.nist.gov/srd/mslist.cfm|Where to Get NIST Databases]] – Databases are available only through distributors. See individual product descriptions for lists of distributors. | + | * Where to Get NIST Databases. Databases are available only through [[:chemdata:distributors|Distributors]] |
| * [[http://www.nist.gov/mml/bmd/data/index.cfm|Mass Spectrometry Data Center]] – NIST home page of the group responsible for this site | * [[http://www.nist.gov/mml/bmd/data/index.cfm|Mass Spectrometry Data Center]] – NIST home page of the group responsible for this site | ||
| * [[http://webbook.nist.gov/chemistry/|NIST Chemistry WebBook]] – site with a diverse collection of data including electron ionization (EI) mass spectra | * [[http://webbook.nist.gov/chemistry/|NIST Chemistry WebBook]] – site with a diverse collection of data including electron ionization (EI) mass spectra | ||
| - | ---- | + | ===== Interlaboratory Study ===== |
| - | <wrap right lo>Inquiries concerning this site should be addressed to stephen.stein[at]@nist.gov.</wrap> | + | * [[:chemdata:glyco_call|Glycans from IgG]] |
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chemdata/start.txt · Last modified: 2020/06/29 17:24 (external edit)
