peptidew:lib:e_coli

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peptidew:lib:e_coli [2018/08/07 15:39] (current)
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 +====== ​ E Coli Ion trap library ======
 +===== May 08, 2013 =====
 +
 +This library was assembled from data contributed by many laboratories. Each library entry contains annotation specifying its origin. Additionally,​ a summary table of the many contributors to this library, including references, can be downloaded [[ftp://​chemdata.nist.gov/​download/​peptide_library/​libraries/​e_coli/​ION_TRAP/​2013_05_08/​e_coli_it_annotation_lib2013.xlsx|here]] (Excel file).
 +
 +{{page>​peptidew:​lib:​newfiles_warning}}
 +
 +<WRAP center group 90%>
 +^ File - Description ^ Size ^ Link ^
 +| **2013_05_08_e_coli_consensus_final_true_lib.tar.gz** - Consensus library in plain ASCII text (msp format). This format can be used as an exchange format. It is also directly readable by some software applications,​ including Skyline, after unzipping. |  109MB | [[ftp://​chemdata.nist.gov/​download/​peptide_library/​libraries/​e_coli/​ION_TRAP/​2013_05_08/​2013_05_08_e_coli_consensus_final_true_lib.tar.gz|Download]] | 
 +| **2013_05_08_e_coli_nist.tar.gz** - Consensus library in NIST binary format. The folder generated by extracting this package can be used directly by [[peptidew:​mspepsearch|MS Search or MSPepSearch]] and by the MSPepSearch node within Proteome Discoverer. |  211MB | [[ftp://​chemdata.nist.gov/​download/​peptide_library/​libraries/​e_coli/​ION_TRAP/​2013_05_08/​2013_05_08_e_coli_nist.tar.gz|Download]] | 
 +| **2013_05_08_e_coli_spectrast.tar.gz** - Consensus library in SpectraST format. ​ These library files can be directly searched by SpectraST after the package is extracted. |  258MB | [[ftp://​chemdata.nist.gov/​download/​peptide_library/​libraries/​e_coli/​ION_TRAP/​2013_05_08/​2013_05_08_e_coli_spectrast.tar.gz|Download]] |
 +| **e_coli_fasta.tar.gz** - FASTA file used to create the library. | 3.5MB | [[ftp://​chemdata.nist.gov/​download/​peptide_library/​libraries/​e_coli/​ION_TRAP/​2013_05_08/​e_coli_fasta.tar.gz|Download]] |
 +| **README.txt** - Readme file.| ​ 4MB |[[ftp://​chemdata.nist.gov/​download/​peptide_library/​libraries/​e_coli/​ION_TRAP/​2013_05_08/​README.txt|Download]]|
 +| **md5_checklist.chk** - MD5 hash file. |  1KB | [[ftp://​chemdata.nist.gov/​download/​peptide_library/​libraries/​e_coli/​ION_TRAP/​2013_05_08/​md5_checklist.chk|Download]] | 
 + 
 +</​WRAP>​
 +
 +  * Total number of Spectra: **62,383**
 +  * Unique Peptide Sequences: **36,230**
 +  * Total Proteins in FASTA file used: **22,581**
 +  * Proteome Coverage: **15.83%**
 +
 +{{page>​pepcopyright}}
 +
  
peptidew/lib/e_coli.txt ยท Last modified: 2018/08/07 15:39 (external edit)