peptidew:lib:humanhcd20160503

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peptidew:lib:humanhcd20160503 [2018/08/07 09:44] (current)
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 +====== Human HCD Library ======
 +=====  September 23, 2016 =====
 +
 +The human HCD library was created from data available on public repositories ( CPTAC and ProteomeXchange)
 +  * CPTAC - [[https://​cptac-data-portal.georgetown.edu/​cptacPublic/​|https://​cptac-data-portal.georgetown.edu/​cptacPublic/​]]
 +  * ProteomeXchange - [[http://​www.proteomexchange.org/​|http://​www.proteomexchange.org]]
 +
 +{{page>​newfiles_warning}}
 +
 +<WRAP center group 80%>
 +^ File - Description ^ Size ^ Link ^
 +| **human_hcd_selected.msp.tar.gz** - Library of selected spectra in plain ASCII text (msp format). This format can be used as an exchange format. It is also directly readable by some software applications,​ like Skyline, after unzipping. |  2.2GB| [[ftp://​chemdata.nist.gov/​download/​peptide_library/​libraries/​human/​HCD/​2016_09_23/​human_hcd_selected.msp.tar.gz|Download]] |
 +| **human_hcd_selected_part1.tar.gz** - First part of the Library of selected spectra in NIST binary format. The folder generated by extracting this package can be used directly by [[peptidew:​mspepsearch|MS Search or MSPepSearch]] and by the MSPepSearch node within Proteome Discoverer. |  5.1GB| [[ftp://​chemdata.nist.gov/​download/​peptide_library/​libraries/​human/​HCD/​2016_09_23/​human_hcd_selected_part1.tar.gz|Download]] | 
 +| **human_hcd_selected_part2.tar.gz** - Second part of the Library of selected spectra in NIST binary format. The folder generated by extracting this package can be used directly by [[peptidew:​mspepsearch|MS Search or MSPepSearch]] and by the MSPepSearch node within Proteome Discoverer. |  379MB| [[ftp://​chemdata.nist.gov/​download/​peptide_library/​libraries/​human/​HCD/​2016_09_23/​human_hcd_selected_part2.tar.gz|Download]] | 
 +| **human_fasta.tar.gz** - FASTA file used to create the library.| ​ 15MB| [[ftp://​chemdata.nist.gov/​download/​peptide_library/​libraries/​human/​HCD/​2016_05_03/​human_fasta.tar.gz|Download]] | 
 +| **md5_checklist.chk** - MD5 hash file. |  1KB| [[ftp://​chemdata.nist.gov/​download/​peptide_library/​libraries/​human/​HCD/​2016_09_23/​md5_checklist.chk|Download]] | 
 +</​WRAP>​
 +
 +  * Total number of Spectra: **1,​127,​970**
 +  * Unique Peptide Sequences: **320,824**
 +  * Total Proteins in FASTA file used: **60,384**
 +  * Proteome Coverage: **27.51%**
 +
 +
 +{{page>​pepcopyright}}
 +
 +
  
peptidew/lib/humanhcd20160503.txt ยท Last modified: 2018/08/07 09:44 (external edit)