User Tools

Site Tools

Trace:
peptidew:lib:mouse20130520

Differences

This shows you the differences between two versions of the page.

Link to this comparison view

peptidew:lib:mouse20130520 [2018/08/07 15:09]
 peptidew:lib:mouse20130520 [2021/07/08 21:41] (current)
Line 1: Line 1:
 +====== Mouse Ion Trap Library======
 +===== May 20, 2013 =====
 +
 +This library was assembled from data contributed by many laboratories.  Each library entry contains annotation specifying its origin.  Additionally, a summary table of the many contributors to this library, including references, can be downloaded [[https://chemdata.nist.gov/download/peptide_library/libraries/mouse/ION_TRAP/2013_05_20/mouse_it_annotation_lib2013.xlsx|here]] (Excel file). 
 +
 +{{page>peptidew:lib:newfiles_warning}}
 +
 +<WRAP center group 90%>
 +^ File - Description ^ Size ^ Link ^
 +| **2013_05_20_mouse_consensus_final_true_lib.tar.gz** - Consensus library in plain ASCII text (msp format). This format can be used as an exchange format. It is also directly readable by some software applications, including Skyline, after unzipping. | 284MB | [[https://chemdata.nist.gov/download/peptide_library/libraries/mouse/ION_TRAP/2013_05_20/2013_05_20_mouse_consensus_final_true_lib.tar.gz|Download]] | 
 +| **2013_05_20_mouse_nist.tar.gz** - Consensus library in NIST binary format. The folder generated by extracting this package can be used directly by [[peptidew:mspepsearch|MS Search or MSPepSearch]] and by the MSPepSearch node within Proteome Discoverer. | 542MB | [[https://chemdata.nist.gov/download/peptide_library/libraries/mouse/ION_TRAP/2013_05_20/2013_05_20_mouse_nist.tar.gz|Download]] | 
 +| **2013_05_20_mouse_spectrast.tar.gz** - Consensus library in SpectraST format.  These library files can be directly searched by SpectraST after the package is extracted. | 668MB | [[https://chemdata.nist.gov/download/peptide_library/libraries/mouse/ION_TRAP/2013_05_20/2013_05_20_mouse_spectrast.tar.gz|Download]] |
 +| **mouse_fasta.tar.gz** - FASTA file used to create the library. | 11MB | [[https://chemdata.nist.gov/download/peptide_library/libraries/mouse/ION_TRAP/2013_05_20/mouse_fasta.tar.gz|Download]] | 
 +| **README.txt** - Readme file.|  4MB |[[https://chemdata.nist.gov/download/peptide_library/libraries/mouse/ION_TRAP/2013_05_20/README.txt|Download]]|
 +| **md5_checklist.chk** - MD5 hash file. |  1KB | [[https://chemdata.nist.gov/download/peptide_library/libraries/mouse/ION_TRAP/2013_05_20/md5_checklist.chk|Download]] |
 +
 +</WRAP>
 +
 +  * Total number of Spectra: **149,458**
 +  * Unique Peptide Sequences: **94,055**
 +  * Total Proteins in FASTA file used: **43,058**
 +  * Proteome Coverage: **10.33%**
 +
 +{{page>pepcopyright}}
  

Page Tools