peptidew:lib:rat_it

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peptidew:lib:rat_it [2018/08/07 15:42] (current)
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 +====== Rat Ion Trap Library ​ ======
 +=====  May 30, 2013 =====
 +
 +This library was assembled from data contributed by many laboratories. Each library entry contains annotation specifying its origin. Additionally,​ a summary table of the many contributors to this library, including references, can be downloaded [[ftp://​chemdata.nist.gov/​download/​peptide_library/​libraries/​rat/​ION_TRAP/​2013_05_30/​rat_it_annotation_lib2013.xlsx|here]] (Excel file).
 +
 +{{page>​peptidew:​lib:​newfiles_warning}}
 +
 +<WRAP center group 90%>
 +^ File - Description ^ Size ^ Link ^
 +| **2013_05_30_rat_consensus_final_true_lib.tar.gz** - Consensus library in plain ASCII text (msp format). This format can be used as an exchange format. It is also directly readable by some software applications,​ including Skyline, after unzipping. |  121MB | [[ftp://​chemdata.nist.gov/​download/​peptide_library/​libraries/​rat/​ION_TRAP/​2013_05_30/​2013_05_30_rat_consensus_final_true_lib.tar.gz|Download]] | 
 +| **2013_05_30_rat_nist.tar.gz** - Consensus library in NIST binary format. The folder generated by extracting this package can be used directly by [[peptidew:​mspepsearch|MS Search or MSPepSearch]] and by the MSPepSearch node within Proteome Discoverer. |  233MB | [[ftp://​chemdata.nist.gov/​download/​peptide_library/​libraries/​rat/​ION_TRAP/​2013_05_30/​2013_05_30_rat_nist.tar.gz|Download]] | 
 +| **2013_05_30_rat_spectrast.tar.gz** - Consensus library in SpectraST format. ​ These library files can be directly searched by SpectraST after the package is extracted. |  288MB | [[ftp://​chemdata.nist.gov/​download/​peptide_library/​libraries/​rat/​ION_TRAP/​2013_05_30/​2013_05_30_rat_spectrast.tar.gz|Download]] |
 +| **rat_fasta.tar.gz** - FASTA file used to create the library. |  8MB | [[ftp://​chemdata.nist.gov/​download/​peptide_library/​libraries/​rat/​ION_TRAP/​2013_05_30/​rat_fasta.tar.gz|Download]] |
 +| **README.txt** - Readme file.| ​ 4MB |[[ftp://​chemdata.nist.gov/​download/​peptide_library/​libraries/​rat/​ION_TRAP/​2013_05_30/​README.txt|Download]]|
 +| **md5_checklist.chk** - MD5 hash file. |  1KB | [[ftp://​chemdata.nist.gov/​download/​peptide_library/​libraries/​rat/​ION_TRAP/​2013_05_30/​md5_checklist.chk|Download]] | 
 + 
 +</​WRAP>​
 +
 +  * Total number of Spectra: **61,707**
 +  * Unique Peptide Sequences: **42,167**
 +  * Total Proteins in FASTA file used: **27,780**
 +  * Proteome Coverage: **6.64%**
 +
 +{{page>​pepcopyright}}
  
peptidew/lib/rat_it.txt ยท Last modified: 2018/08/07 15:42 (external edit)