peptidew:lib:yeast_it
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| + | ====== Yeast Ion Trap Library ====== | ||
| + | ===== April 06, 2012 ===== | ||
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| + | This library was assembled from data contributed by many laboratories. Each library entry contains annotation specifying its origin. Additionally, a summary table of the many contributors to this library, including references, can be downloaded [[ftp://chemdata.nist.gov/download/peptide_library/libraries/yeast/ION_TRAP/2012_04_06/yeast_it_annotation_lib2012.xlsx|here]] (Excel file). | ||
| + | |||
| + | {{page>peptidew:lib:newfiles_warning}} | ||
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| + | <WRAP center group 90%> | ||
| + | ^ File - Description ^ Size ^ Link ^ | ||
| + | | **2012_04_06_yeast_consensus_final_true_lib.tar.gz** - Consensus library in plain ASCII text (msp format). This format can be used as an exchange format. It is also directly readable by some software applications, including Skyline, after unzipping. | 165MB | [[ftp://chemdata.nist.gov/download/peptide_library/libraries/yeast/ION_TRAP/2012_04_06/2012_04_06_yeast_consensus_final_true_lib.tar.gz|Download]] | | ||
| + | | **2012_04_06_yeast_nist.tar.gz** - Consensus library in NIST binary format. The folder generated by extracting this package can be used directly by [[peptidew:mspepsearch|MS Search or MSPepSearch]] and by the MSPepSearch node within Proteome Discoverer. | 300MB | [[ftp://chemdata.nist.gov/download/peptide_library/libraries/yeast/ION_TRAP/2012_04_06/2012_04_06_yeast_nist.tar.gz|Download]] | | ||
| + | | **2012_04_06_yeast_spectrast.tar.gz** - Consensus library in SpectraST format. These library files can be directly searched by SpectraST after the package is extracted. | 393MB | [[ftp://chemdata.nist.gov/download/peptide_library/libraries/yeast/ION_TRAP/2012_04_06/2012_04_06_yeast_spectrast.tar.gz|Download]] | | ||
| + | | **yeast_fwd.fasta.tar.gz** - FASTA file used to create the library. | 1.5MB | [[ftp://chemdata.nist.gov/download/peptide_library/libraries/yeast/ION_TRAP/2012_04_06/yeast_fwd.fasta.tar.gz|Download]] | | ||
| + | | **README.txt** - Readme file.| 4MB |[[ftp://chemdata.nist.gov/download/peptide_library/libraries/yeast/ION_TRAP/2012_04_06/README.txt|Download]]| | ||
| + | | **md5_checklist.chk** - MD5 hash file. | 1KB| [[ftp://chemdata.nist.gov/download/peptide_library/libraries/yeast/ION_TRAP/2012_04_06/md5_checklist.chk|Download]] | | ||
| + | |||
| + | </WRAP> | ||
| + | |||
| + | * Total number of Spectra: **92,609** | ||
| + | * Unique Peptide Sequences: **65,896** | ||
| + | * Total Proteins in FASTA file used: **6,796** | ||
| + | * Proteome Coverage: **26.99%** | ||
| + | |||
| + | {{page>pepcopyright}} | ||
peptidew/lib/yeast_it.txt ยท Last modified: 2018/08/07 15:29 (external edit)
