https://chemdata.nist.gov/dokuwiki/ 2026-04-08T22:26:44+00:00 https://chemdata.nist.gov/dokuwiki/ https://chemdata.nist.gov/dokuwiki/lib/tpl/dokuwiki/images/favicon.ico text/html 2021-11-24T13:28:56+00:00 Anonymous (anonymous@undisclosed.example.com) https://chemdata.nist.gov/dokuwiki/doku.php?id=peptidew:cdownload&rev=1637778536&do=diff Libraries of Peptide Tandem Mass Spectra Including CPTAC data Library Instrument Label/PTM Species Build date mm-dd-yyyy Spectra Peptides Link Hs Human Ion Trap H. sapiens 05-29-2014 340,357 207,910 Download Orbitrap - HCD text/html 2015-04-13T11:24:00+00:00 Anonymous (anonymous@undisclosed.example.com) https://chemdata.nist.gov/dokuwiki/doku.php?id=peptidew:download&rev=1428938640&do=diff NIST Libraries of Peptide Tandem Mass Spectra Library Instrument Species Build Date Spectra Samples Link Hs Human Ion Trap H. sapiens 05-29-2014 340,357 772 Download Hs Human Collision Cell H. sapiens 06-03-2013 73,304 text/html 2023-02-08T10:59:18+00:00 Anonymous (anonymous@undisclosed.example.com) https://chemdata.nist.gov/dokuwiki/doku.php?id=peptidew:downloadproblem&rev=1675871958&do=diff FTP problem - cannot download file with internet browser Modern internet browsers such as Firefox or Google Chrome has stopped the support of the FTP protocol... We have moved most of our downloadable files from FTP-server to the Web-server. Our text/html 2026-02-19T15:53:35+00:00 Anonymous (anonymous@undisclosed.example.com) https://chemdata.nist.gov/dokuwiki/doku.php?id=peptidew:glycomass&rev=1771534415&do=diff Glycopeptide Mass Spectral Libraries Libraries constructed from the analyses of intact glycopeptides derived from human IgG1 mAb drugs, human milk, SARS-CoV-2 spike, hemagglutinin and neuraminidase glycoproteins have been made available for download. For experimental details, please see publication associated with each library. text/html 2022-10-04T11:45:01+00:00 Anonymous (anonymous@undisclosed.example.com) https://chemdata.nist.gov/dokuwiki/doku.php?id=peptidew:human_n_linked_glyco&rev=1664898301&do=diff Human Milk N-linked Glycopeptides This free product is for searching and browsing the human milk glycopeptides fragmentation library (MS/MS) and Glycopeptide Abundance Distribution Spectra (GADS) library. Publication: Mass Spectra Library-Based Methods for Analysis of Site-specific N-Glycosylation Applied to Human Milk Proteins. text/html 2025-05-19T15:19:29+00:00 Anonymous (anonymous@undisclosed.example.com) https://chemdata.nist.gov/dokuwiki/doku.php?id=peptidew:human_plasma_glycopeptides&rev=1747682369&do=diff Human Plasma Glycopeptides – Preliminary This free data and software product is for searching and browsing Glycopeptide Abundance Distribution Spectra (GADS) as well as tandem tryptic glycopeptide mass spectra and glycan fragment ion distributions. All are derived from multiple digestions of 39 purified human plasma glycoproteins. text/html 2025-05-19T13:36:11+00:00 Anonymous (anonymous@undisclosed.example.com) https://chemdata.nist.gov/dokuwiki/doku.php?id=peptidew:influenza_a_glycoproteins&rev=1747676171&do=diff Hemagglutinin and Neuraminidase Glycopeptides This free product is for searching and browsing Glycopeptide Abundance Distribution Spectra (GADS) as well as tandem mass spectra derived from eight recombinant strains of influenza A hemagglutinin and neuraminidase glycoproteins. text/html 2021-03-11T22:11:00+00:00 Anonymous (anonymous@undisclosed.example.com) https://chemdata.nist.gov/dokuwiki/doku.php?id=peptidew:mab&rev=1615518660&do=diff Libraries of Antibody Tandem Mass Spectra Library Instrument Label/PTM Species Build date mm-dd-yyyy Spectra Peptides Link mAb IgG1 Glyco- peptides Q Exactive - HCD IgG1 mAb 11-06-2015 1,700 300 Download mAb NISTmAb Q Exactive - HCD text/html 2022-02-03T16:55:57+00:00 Anonymous (anonymous@undisclosed.example.com) https://chemdata.nist.gov/dokuwiki/doku.php?id=peptidew:ms_piano&rev=1643925357&do=diff MS_Piano for Annotating Peaks in Mass Spectra of Peptides and N-Glycopeptides MS_Piano (Mass Spectrum Peptide Annotation) is a comprehensive software for fast and reliable annotation of high- and low- resolution tandem mass spectra of CID and ETD in text/html 2024-04-30T14:23:59+00:00 Anonymous (anonymous@undisclosed.example.com) https://chemdata.nist.gov/dokuwiki/doku.php?id=peptidew:mspepsearch&rev=1714501439&do=diff MS PepSearch This program was developed for proteomics and metabolomics applications, in which hundreds or thousands of unknown tandem mass spectra are generated. The program works by searching a peak list file against up to 16 MS/MS reference libraries. MSPepSearch may input centroided mass spectra in MGF and MSP formats. The output is a match list in tab-delimited text format which can easily be viewed in a spreadsheet application or parsed with scripts as part of a pipeline. text/html 2019-02-25T11:52:00+00:00 Anonymous (anonymous@undisclosed.example.com) https://chemdata.nist.gov/dokuwiki/doku.php?id=peptidew:mspepsearchgui&rev=1551113520&do=diff MSPepSearch with GUI Release 06/03/2013, fixes 2015, searches up to 4 libraries. Operating Instructions (click on the picture to see bigger image) The main window of the program can be divided into 4 parts: * 1. List of input data: The program currently reads input spectra in MGF and MSP file formats. User can select either individual files or an entire folder that contains MGF and/or MSP files. text/html 2021-07-12T12:03:00+00:00 Anonymous (anonymous@undisclosed.example.com) https://chemdata.nist.gov/dokuwiki/doku.php?id=peptidew:msqcpipeline&rev=1626105780&do=diff NIST MSQC Pipeline Attention: Support for NIST MSQC Pipeline is discontinued Software for Monitoring LC-MS Performance This program was written to systematically evaluate analytical performance of a common discovery-based proteomics platform by monitoring selected output from a liquid chromatography -mass spectrometry (LC-MS/MS) system. The software was developed to help researchers identify sources of variations due to analytical problems. The idea behind the software is that if analytical… text/html 2021-07-12T13:48:00+00:00 Anonymous (anonymous@undisclosed.example.com) https://chemdata.nist.gov/dokuwiki/doku.php?id=peptidew:newigghsalib&rev=1626112080&do=diff Glycopeptide Mass Spectral Library (HCD) of Human IgG1 mAb Drugs Over 1,700 HCD energy-dependent spectra for 81 different glycans attached to 7 different tryptic peptide sequences are contained in this library available in a .ZIP archive as part of NIST MS Search, a full-featured Microsoft Windows® application. text/html 2021-07-19T10:05:00+00:00 Anonymous (anonymous@undisclosed.example.com) https://chemdata.nist.gov/dokuwiki/doku.php?id=peptidew:nistmsgads&rev=1626703500&do=diff Glycopeptide Abundance Distribution Spectra (GADS) Software and Libraries The following link contains a zip file for downloading NISTMS-GADS software, associated libraries, and documentation for processing GADS files: [nistms-gads.zip] Copy to a folder of your choice (suggest NISTMS-GADS). Begin by starting the nistms-gads.exe program after extraction. text/html 2021-07-12T12:47:00+00:00 Anonymous (anonymous@undisclosed.example.com) https://chemdata.nist.gov/dokuwiki/doku.php?id=peptidew:nistmssearch&rev=1626108420&do=diff NIST Peptide Library Browser and BSA Library NIST Peptide Library Browser (NIST MS Search) is a 32-bit Windows application for browsing and searching mass spectral libraries. A small peptide MS/MS library, BSA, is included. You can also download other peptide libraries. text/html 2021-03-11T19:38:00+00:00 Anonymous (anonymous@undisclosed.example.com) https://chemdata.nist.gov/dokuwiki/doku.php?id=peptidew:oligo&rev=1615509480&do=diff Libraries of Oligosaccharide Tandem Mass Spectra Library Instrument Derivative/PTM Species Release date mm-dd-yyyy Spectra Distinct Oligosaccharides Link Human Milk SRM1953 Orbit Trap - HCD FT-IT H. sapiens 03-14-2018 470 text/html 2022-02-02T16:20:53+00:00 Anonymous (anonymous@undisclosed.example.com) https://chemdata.nist.gov/dokuwiki/doku.php?id=peptidew:pepsoftware&rev=1643836853&do=diff Software for Peptide Mass Spectral Libraries * MS PepSearch program - a Windows fast library search algorithm for batch identification of peptides with a graphical user interface. An mgf or msp format user input file can be searched against multiple NIST libraries. Output is a list of matches in tab-delimited text format which can easily be viewed in a spreadsheet application or parsed with scripts as part of a pipeline. text/html 2026-02-19T15:52:20+00:00 Anonymous (anonymous@undisclosed.example.com) https://chemdata.nist.gov/dokuwiki/doku.php?id=peptidew:protein_subunit_vaccine_glyco&rev=1771534340&do=diff Protein Subunit Vaccine Glycopeptides – Preliminary This free product is for searching and browsing Glycopeptide Abundance Distribution Spectra (GADS) as well as tandem mass spectra derived from 15 commercially available vaccines, including monovalent and quadrivalent influenza as well as a SARS-CoV-2 vaccine and Shingles vaccine. text/html 2023-05-05T10:25:25+00:00 Anonymous (anonymous@undisclosed.example.com) https://chemdata.nist.gov/dokuwiki/doku.php?id=peptidew:sars-cov-2_spike_protein_n_linked_glyco&rev=1683296725&do=diff SARS-CoV-2 Spike Protein Glycopeptides This free product is for searching and browsing Glycopeptide Abundance Distribution Spectra (GADS) derived from 11 commercial sources of SARS-CoV-2 spike protein. Publication: Determining Site-Specific Glycan Profiles of Recombinant SARS-CoV-2 Spike Proteins from Multiple Sources. text/html 2023-08-24T22:46:12+00:00 Anonymous (anonymous@undisclosed.example.com) https://chemdata.nist.gov/dokuwiki/doku.php?id=peptidew:sidebar&rev=1692931572&do=diff Mass Spectrometry Data center * Libraries/Tools/Service * Publications ---------- * Peptide Libraries * Software * Download Libraries * Attention! FTP Problem ---------- * Glycopeptide Libraries * Oligosaccharide Libraries * Human Milk * Mammalian Milk * Antibody Libraries * Glycopeptides * NISTmAb Peptides and Modifications * NISTmAb Disulfide-Bonded Peptides ---------- * Team ---------- * Contact: massspec@nist.gov ---------- text/html 2022-02-02T16:15:59+00:00 Anonymous (anonymous@undisclosed.example.com) https://chemdata.nist.gov/dokuwiki/doku.php?id=peptidew:start&rev=1643836559&do=diff NIST Libraries of Peptide Tandem Mass Spectra DOI: 10.18434/T4ZK5S What they are NIST peptide libraries are comprehensive, annotated mass spectral reference collections from various organisms and proteins useful for the rapid matching and identification of acquired MS/MS spectra. Spectra were produced by tandem mass spectrometers using liquid chromatographic separations followed by electrospray ionization. Unlike the NIST small molecule electron ionization library which contains one spectrum…