User Tools

Site Tools

Trace:
chemdata:start

Differences

This shows you the differences between two versions of the page.

Link to this comparison view

chemdata:start [2020/03/12 16:31]
 chemdata:start [2025/05/30 10:56] (current)
Line 1: Line 1:
 +~~NOTOC~~
 +
 +
 +====== Libraries, Tools, Service ======
 +
 +
 +{{:chemdata:msdatacenter_ani.gif?nolink&  }}This site provides information and access to NIST mass spectral data products. A variety of data products are available, including EI and tandem MS libraries (small molecule and peptide), a GC retention index collection as well as certain freely available, specialized spectral libraries. Freely available data analysis tools include AMDIS (Automated Mass Spectral Deconvolution and Identification System for GC/MS), the Mass Spectrum Interpreter (connects chemical structures with mass spectra), and the Mass Spectral Digitizer Program. Also available is a fully functional, version of NIST MS Search Program v.2.3 with a small demonstration library.
 +
 +
 +===== Libraries =====
 +
 +
 +    * <color red>**ANNOUNCEMENT**</color> - {{ :chemdata:asms2023:asms2023_nist23_features.pdf |2023 Release of the NIST EI and Tandem Libraries}}. 
 +      * More information about NIST23 Release can be found on this page: [[chemdata:asms2023:asms_2023|ASMS 2023]] 
 +
 +    * **Distributors**: NIST Databases are available only through [[:chemdata:distributors|Distributors]]
 +    * [[:chemdata:nistlibs|NIST Libraries and software]] - For Users of NIST Libraries and Software
 +    * [[https://peptide.nist.gov/|NIST Peptide MS Libraries]] – Nearly 3.8 million MS/MS Spectra for multiple biological species
 +    * [[:chemdata:msms|NIST Tandem MS Library]]- Library of tandem mass spectra for both ion-trap and variable-energy collision cell fragmentation
 +    * [[:chemdata:ridatabase|NIST GC Method / Retention Index MS Library]]- Extensive collection of GC retention indices with method information
 +    * [[https://chemdata.nist.gov/srmd-1953-glycan|On-Line Milk SRM/D 1953 Tandem MS library]] - Web version of the SRM/D 1953 Library.
 +    * [[https://chemdata.nist.gov/glycan/|On-Line Glycan MS/MS Library]] - Web version of the NIST Glycan Mass Spectral Reference Library
 +    * [[:chemdata:epatandem-library|EPA Tandem Mass Spectrometry Library]] – Starter library of environmentally relevant compounds
 +    * [[:chemdata:dart-library|DART Forensics Library]] – A library of in-source fragmentation spectra of DART-generated ions
 +    * [[:chemdata:glycan-library|Glycan MS/MS Library]] – A library of 209 glycans (includes MS Search software and 16,421 glycan spectra extracted from the NIST Tandem Library)
 +    * [[:chemdata:arus|ARUS]] - Annotated Recurrent Unidentified Spectra (ARUS ) Libraries for Analysis
 +    * [[:chemdata:polymersearch|NIST-Polymer Pyrolysis Search]] – An R shiny app and library to search pyrolysis GCMS data
 +    
 +
 +===== Tools =====
 +
 +
 +    * [[:chemdata:interpreter|Mass Spectrum Interpreter]] 2023 Release (v.3.4.5). Information and downloads for version 3.4 of this program which connects mass spectral peaks to their probable chemical structure origin (EI and MS/MS, both nominal and accurate mass).
 +    * [[:chemdata:nistlibs|NIST MS Software and Data]] - updates, demo, documentation, MSPepSearch, Lib2NIST, RUS libraries and support programs.
 +    * [[:chemdata:amdis|AMDIS]] – computer program that extracts spectra for individual components in a GC/MS data file (Instructions for using AMDIS with MS Search – 11-25-2019 Release
 +    * [[:chemdata:digitizer|Mass Spectrum Digitizer Program]] – a tutorial on how to use the program (includes program download) that allows the digitization of graphical spectra
 +    * [[:chemdata:glycocalc|The NIST Glyco Mass Calculator]] - a tool to aid in the analysis of glycoforms
 +    * [[:chemdata:dimedr|DIMEDR]] - A Novel Algorithm for Agglomerating Incongruent LC-MS Metabolomics Datasets.
 +    * [[peptidew:ms_piano|MS_Piano]] (New, 2021) - A new software tool for annotating peaks in collision induced dissociation (CID) tandem mass spectra of peptides and N-glycopeptides.
 +
 +
 +===== Other Products and Services =====
 +
 +
 +    * Where to Get NIST Databases. Databases are available only through [[:chemdata:distributors|Distributors]]
 +    * [[http://www.nist.gov/mml/bmd/data/index.cfm|Mass Spectrometry Data Center]] – NIST home page of the group responsible for this site
 +    * [[http://webbook.nist.gov/chemistry/|NIST Chemistry WebBook]] – site with a diverse collection of data including electron ionization (EI) mass spectra
 +
 +
 +===== Interlaboratory Study =====
 +
 +
 +    * [[:chemdata:glyco_call|Glycans from IgG]]
 +
 +
 +----
  

Page Tools