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peptidew:lib:c_elegans [2018/08/07 15:24]
 peptidew:lib:c_elegans [2021/07/08 21:58] (current)
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 +====== C Elegans Ion Trap Library  ======
 +===== May 24, 2011 =====
 +
 +This library was assembled from data contributed by many laboratories. Each library entry contains annotation specifying its origin. Additionally, a summary table of the many contributors to this library, including references, can be downloaded [[https://chemdata.nist.gov/download/peptide_library/libraries/c_elegans/ION_TRAP/2011_05_24/c_elegans_it_annotation_lib2011.xlsx|here]] (Excel file).
 +
 +{{page>peptidew:lib:newfiles_warning}}
 +
 +<WRAP center group 90%>
 +^ File - Description ^ Size ^ Link ^
 +| **2011_05_24_c_elegans_consensus_final_true_lib.tar.gz** - Consensus library in plain ASCII text (msp format). This format can be used as an exchange format. It is also directly readable by some software applications, including Skyline, after unzipping. |  129MB | [[https://chemdata.nist.gov/download/peptide_library/libraries/c_elegans/ION_TRAP/2011_05_24/2011_05_24_c_elegans_consensus_final_true_lib.tar.gz|Download]] | 
 +| **2011_05_24_c_elegans_nist.tar.gz** - Consensus library in NIST binary format. The folder generated by extracting this package can be used directly by [[peptidew:mspepsearch|MS Search or MSPepSearch]] and by the MSPepSearch node within Proteome Discoverer. |  256MB | [[https://chemdata.nist.gov/download/peptide_library/libraries/c_elegans/ION_TRAP/2011_05_24/2011_05_24_c_elegans_nist.tar.gz|Download]] | 
 +| **2011_05_24_c_elegans_spectrast.tar.gz** - Consensus library in SpectraST format.  These library files can be directly searched by SpectraST after the package is extracted. |  306MB | [[https://chemdata.nist.gov/download/peptide_library/libraries/c_elegans/ION_TRAP/2011_05_24/2011_05_24_c_elegans_spectrast.tar.gz|Download]] |
 +| **c_elegans_fasta.tar.gz** - FASTA file used to create the library. |  5MB | [[https://chemdata.nist.gov/download/peptide_library/libraries/c_elegans/ION_TRAP/2011_05_24/c_elegans_fasta.tar.gz|Download]] |
 +| **README.txt** - Readme file. |  4KB| [[https://chemdata.nist.gov/download/peptide_library/libraries/c_elegans/ION_TRAP/2011_05_24/README.txt|Download]] | 
 +| **md5_checklist.chk** - MD5 hash file. |  1KB| [[https://chemdata.nist.gov/download/peptide_library/libraries/c_elegans/ION_TRAP/2011_05_24/md5_checklist.chk|Download]] |  
 +</WRAP>
 +
 +  * Total number of Spectra: **67,470**
 +  * Unique Peptide Sequences: **43,359**
 +  * Total Proteins in FASTA file used: **22,448**
 +  * Proteome Coverage: **7.88%**
 +
 +{{page>pepcopyright}}
  

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