Differences

This shows you the differences between two versions of the page.

--- peptidew:lib:sigmaups1_it [2018/08/07 15:55]
+++ peptidew:lib:sigmaups1_it [2021/07/08 22:14] (current)
@@ Line 1: / Line 1: @@
+======  Sigmaups1 Ion Trap Library ======
+=====  May 24, 2011 =====
+This library was assembled from data contributed by many laboratories. Each library entry contains annotation specifying its origin. Additionally, a summary table of the many contributors to this library, including references, can be downloaded  [[https://chemdata.nist.gov/download/peptide_library/libraries/sigmaups1/ION_TRAP/2011_05_24/sigmaups1_it_annotation_lib2011.xlsx|here]] (Excel file).
+{{page>peptidew:lib:newfiles_warning}}
+<WRAP center group 90%>
+^ File - Description ^ Size ^ Link ^
+| **2011_05_24_sigmaups1_consensus_final_true_lib.tar.gz** - Consensus library in plain ASCII text (msp format). This format can be used as an exchange format. It is also directly readable by some software applications, including Skyline, after unzipping. |  4.5MB | [[https://chemdata.nist.gov/download/peptide_library/libraries/sigmaups1/ION_TRAP/2011_05_24/2011_05_24_sigmaups1_consensus_final_true_lib.tar.gz|Download]] |
+| **2011_05_24_sigmaups1_nist.tar.gz** - Consensus library in NIST binary format. The folder generated by extracting this package can be used directly by [[peptidew:mspepsearch|MS Search or MSPepSearch]] and by the MSPepSearch node within Proteome Discoverer. |  10MB | [[https://chemdata.nist.gov/download/peptide_library/libraries/sigmaups1/ION_TRAP/2011_05_24/2011_05_24_sigmaups1_nist.tar.gz|Download]] |
+| **2011_05_24_sigmaups1_spectrast.tar.gz** - Consensus library in SpectraST format.  These library files can be directly searched by SpectraST after the package is extracted. |  12MB | [[https://chemdata.nist.gov/download/peptide_library/libraries/sigmaups1/ION_TRAP/2011_05_24/2011_05_24_sigmaups1_spectrast.tar.gz|Download]] |
+| **sigmaups1_fasta.tar.gz** - FASTA file used to create the library. |  9KB | [[https://chemdata.nist.gov/download/peptide_library/libraries/sigmaups1/ION_TRAP/2011_05_24/sigmaups1_fasta.tar.gz|Download]] |
+| **README.txt** - Readme file.|  4MB |[[https://chemdata.nist.gov/download/peptide_library/libraries/sigmaups1/ION_TRAP/2011_05_24/README.txt|Download]]|
+| **md5_checklist.chk** - MD5 hash file. |  1KB | [[https://chemdata.nist.gov/download/peptide_library/libraries/sigmaups1/ION_TRAP/2011_05_24/md5_checklist.chk|Download]] |
+</WRAP>
+  * Total number of Spectra: **3,029**
+  * Unique Peptide Sequences: **1,674**
+  * Total Proteins in FASTA file used: **48**
+  * Proteome Coverage: **85.65%**
+{{page>pepcopyright}}

CHEMDATA

User Tools

Differences