User Tools

Site Tools

Trace:
peptidew:lib:yeast_it

Differences

This shows you the differences between two versions of the page.

Link to this comparison view

peptidew:lib:yeast_it [2018/08/07 15:29]
 peptidew:lib:yeast_it [2021/07/08 22:03] (current)
Line 1: Line 1:
 +======  Yeast Ion Trap Library ======
 +=====  April 06, 2012 =====
 +
 +This library was assembled from data contributed by many laboratories. Each library entry contains annotation specifying its origin. Additionally, a summary table of the many contributors to this library, including references, can be downloaded [[https://chemdata.nist.gov/download/peptide_library/libraries/yeast/ION_TRAP/2012_04_06/yeast_it_annotation_lib2012.xlsx|here]] (Excel file). 
 +
 +{{page>peptidew:lib:newfiles_warning}}
 +
 +<WRAP center group 90%>
 +^ File - Description ^ Size ^ Link ^
 +| **2012_04_06_yeast_consensus_final_true_lib.tar.gz** - Consensus library in plain ASCII text (msp format). This format can be used as an exchange format. It is also directly readable by some software applications, including Skyline, after unzipping. |  165MB | [[https://chemdata.nist.gov/download/peptide_library/libraries/yeast/ION_TRAP/2012_04_06/2012_04_06_yeast_consensus_final_true_lib.tar.gz|Download]] | 
 +| **2012_04_06_yeast_nist.tar.gz** - Consensus library in NIST binary format. The folder generated by extracting this package can be used directly by [[peptidew:mspepsearch|MS Search or MSPepSearch]] and by the MSPepSearch node within Proteome Discoverer. |  300MB | [[https://chemdata.nist.gov/download/peptide_library/libraries/yeast/ION_TRAP/2012_04_06/2012_04_06_yeast_nist.tar.gz|Download]] | 
 +| **2012_04_06_yeast_spectrast.tar.gz** - Consensus library in SpectraST format.  These library files can be directly searched by SpectraST after the package is extracted. |  393MB | [[https://chemdata.nist.gov/download/peptide_library/libraries/yeast/ION_TRAP/2012_04_06/2012_04_06_yeast_spectrast.tar.gz|Download]] |
 +| **yeast_fwd.fasta.tar.gz** - FASTA file used to create the library. |  1.5MB | [[https://chemdata.nist.gov/download/peptide_library/libraries/yeast/ION_TRAP/2012_04_06/yeast_fwd.fasta.tar.gz|Download]] | 
 +| **README.txt** - Readme file.|  4MB |[[https://chemdata.nist.gov/download/peptide_library/libraries/yeast/ION_TRAP/2012_04_06/README.txt|Download]]|
 +| **md5_checklist.chk** - MD5 hash file. |  1KB| [[https://chemdata.nist.gov/download/peptide_library/libraries/yeast/ION_TRAP/2012_04_06/md5_checklist.chk|Download]] |
 +
 +</WRAP>
 +
 +  * Total number of Spectra: **92,609**
 +  * Unique Peptide Sequences: **65,896**
 +  * Total Proteins in FASTA file used: **6,796**
 +  * Proteome Coverage: **26.99%**
 +
 +{{page>pepcopyright}}
  

Page Tools