The mouse HCD iTRAQ-4 library was created entirely from raw data stored on the Clinical Proteomic Tumor Analysis Consortium (CPTAC) data portalhttps://cptac-data-portal.georgetown.edu/cptacPublic/. Contributing laboratories were the Broad Institute, Johns Hopkins University and Pacific Northwest National Laboratory.
The libraries in the msp and NIST binary formats were updated on July 25, 2018. Previous versions of these files are available on request.
| File - Description | Size | Link |
|---|---|---|
| cptac2_mouse_hcd_itraq_selected.msp.tar.gz - Consensus library in plain ASCII text (msp format). This format can be used as an exchange format. It is also directly readable by some software applications, including Skyline, after unzipping. | 350MB | Download |
| cptac2_mouse_hcd_itraq_selected.tar.gz - Consensus library in NIST binary format. The folder generated by extracting this package can be used directly by MS Search or MSPepSearch and by the MSPepSearch node within Proteome Discoverer. | 600MB | Download |
| 20111201-RefSeq-Human-37-Mouse-37-Trypsin.fasta.tar.gz - FASTA file used to search CompRef human-mouse xenograft samples. | 16.2MB | Download |
| md5_checklist.chk - MD5 hash file. | 1KB | Download |