Human HCD Library

Nov. 24, 2014

The human HCD library was created entirely from raw data stored on the Clinical Proteomic Tumor Analysis Consortium (CPTAC) data portal This library was compiled from data contributed by the University of North Carolina from the analysis of human tumor-mouse xenograft tissues.

File - Description Size Link
cptac2_human_hcd_selected.msp.tar.gz - Consensus library in plain ASCII text (msp format). This format can be used as an exchange format. It is also directly readable by some software applications, including Skyline, after unzipping. 590MB Download
cptac2_human_hcd_selected.tar.gz - Consensus library in NIST binary format. The folder generated by extracting this package can be used directly by MS Search or MSPepSearch and by the MSPepSearch node within Proteome Discoverer. 1.0GB Download
20111201-RefSeq-Human-37-Mouse-37-Trypsin.fasta.tar.gz - FASTA file used to search CompRef human-mouse xenograft samples.16.2MBDownload
md5_checklist.chk - MD5 hash file. 1KB Download

* Total number of Spectra: 183,140
* Unique Peptide Sequences: 92,409
* Total Proteins in FASTA file used: 62,417