peptidew:lib:human20140529

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peptidew:lib:human20140529 [2018/08/06 12:47] (current)
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 +====== Human Ion Trap Library ​ ======
 +=====  May 29, 2014 =====
  
 +This library was assembled from data contributed by many laboratories. ​ Each library entry contains annotation specifying its origin. ​ Additionally,​ a summary table of the many contributors to this library, including references, can be downloaded [[ftp://​chemdata.nist.gov/​download/​peptide_library/​libraries/​human/​ION_TRAP/​2014_05_29/​human_it_annotation_lib2014.xlsx|here]] (Excel file).
 +
 +{{page>​newfiles_warning}}
 +
 +<WRAP center group 80%>
 +^ File - Description ^ Size ^ Link ^
 +| **2014_05_29_human_consensus_final_true_lib.tar.gz** - Consensus library in plain ASCII text (msp format). This format can be used as an exchange format. It is also directly readable by some software applications,​ like Skyline, after unzipping. |  694MB| [[ftp://​chemdata.nist.gov/​download/​peptide_library/​libraries/​human/​ION_TRAP/​2014_05_29/​2014_05_29_human_consensus_final_true_lib.tar.gz|Download]] |
 +| **2014_05_29_human_nist.tar.gz** - Consensus library in NIST binary format. The folder generated by extracting this package can be used directly by [[peptidew:​mspepsearch|MS Search or MSPepSearch]] and by the MSPepSearch node within Proteome Discoverer. |  1.3GB| [[ftp://​chemdata.nist.gov/​download/​peptide_library/​libraries/​human/​ION_TRAP/​2014_05_29/​2014_05_29_human_nist.tar.gz|Download]] | 
 +| **2014_05_29_human_spectrast.tar.gz** - Consensus library in SpectraST format. ​ These library files can be directly searched by SpectraST after the package is extracted. |  1.6GB| [[ftp://​chemdata.nist.gov/​download/​peptide_library/​libraries/​human/​ION_TRAP/​2014_05_29/​2014_05_29_human_spectrast.tar.gz|Download]] |
 +| **human_fasta.tar.gz** - FASTA file used to create the library. |  15MB| [[ftp://​chemdata.nist.gov/​download/​peptide_library/​libraries/​human/​ION_TRAP/​2014_05_29/​human_fasta.tar.gz|Download]] | 
 +| **md5_checklist.chk** - MD5 hash file. |  1KB| [[ftp://​chemdata.nist.gov/​download/​peptide_library/​libraries/​human/​ION_TRAP/​2014_05_29/​md5_checklist.chk|Download]] | 
 +</​WRAP>​
 +
 +  * Total number of Spectra: **340,356**
 +  * Unique Peptide Sequences: **207,910**
 +  * Total Proteins in FASTA file used: **60,384**
 +  * Proteome Coverage: **22.31%**
 +
 +
 +{{page>​pepcopyright}}
peptidew/lib/human20140529.txt ยท Last modified: 2018/08/06 12:47 (external edit)