peptidew:lib:phoshopept_labelfree_20190214

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peptidew:lib:phoshopept_labelfree_20190214 [2019/02/15 09:54] (current)
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 +====== Human Phosphopeptide Label Free Library ======
 +=====( Feb. 14, 2019) =====
 +The human phosphopeptide spectral library was created from data deposited with the ProteomeXchange Consortium (http://​proteomecentral.proteomexchange.org) via the PRIDE partner repository with the data set identifier PXD000612.
  
 +**Reference:​** //Sharma K, D'​Souza RC, Tyanova S, Schaab C, Wiśniewski JR, Cox J, Mann M. Ultradeep Human Phosphoproteome Reveals a Distinct Regulatory Nature of Tyr and Ser/​Thr-Based Signaling. Cell Rep. 2014 Aug 20. pii: S2211-1247(14)00620-2 PubMed: 25159151
 +//
 +
 +
 +<WRAP center group 90%>
 +^ File - Description ^ Size ^ Link ^
 +| **human_hcd_labelfree_phospho_selected_passed.msp.tar.gz** - Consensus library in plain ASCII text (msp format). This format can be used as an exchange format. It is also directly readable by some software applications,​ including Skyline, after unzipping. |  240MB| [[ftp://​chemdata.nist.gov/​download/​peptide_library/​libraries/​human/​HCD/​2019_02_14/​human_hcd_labelfree_phospho_selected_passed.msp.tar.gz|Download]] |
 +| **human_hcd_labelfree_phospho_selected_passed.tar.gz** - Consensus library in NIST binary format. The folder generated by extracting this package can be used directly by [[peptidew:​mspepsearch|MS Search or MSPepSearch]] and by the MSPepSearch node within Proteome Discoverer. |  540MB| [[ftp://​chemdata.nist.gov/​download/​peptide_library/​libraries/​human/​HCD/​2019_02_14/​human_hcd_labelfree_phospho_selected_passed.tar.gz|Download]] | 
 +| **uniprot-all.fasta.tar.gz** - FASTA file used to search CompRef human-mouse xenograft samples.| ​ 7MB|[[ftp://​chemdata.nist.gov/​download/​peptide_library/​libraries/​human/​HCD/​2019_02_14/​uniprot-all.fasta.tar.gz|Download]]|
 +| **md5_checklist.chk** - MD5 hash file. |  1KB| [[ftp://​chemdata.nist.gov/​download/​peptide_library/​libraries/​human/​HCD/​2019_02_14/​md5_checklist.chk|Download]] |
 + 
 +</​WRAP>​
 +
 +  * Total number of Spectra: **66,922**
 +  * Unique Peptide Sequences: **27,400**
 +  * Total Proteins in FASTA file used: **20,183**
 +  * Proteome Sequence Coverage: **3.9%**
 +
 +{{page>​pepcopyright}}
peptidew/lib/phoshopept_labelfree_20190214.txt · Last modified: 2019/02/15 09:54 (external edit)