Mass Spectrometry Data center
The mouse HCD iTRAQ-4 library was created entirely from raw data stored on the Clinical Proteomic Tumor Analysis Consortium (CPTAC) data portalhttps://cptac-data-portal.georgetown.edu/cptacPublic/. Contributing laboratories were the Broad Institute, Johns Hopkins University and Pacific Northwest National Laboratory.
|File - Description||Size||Link|
|cptac2_mouse_hcd_itraq_selected.msp.tar.gz - Consensus library in plain ASCII text (msp format). This format can be used as an exchange format. It is also directly readable by some software applications, including Skyline, after unzipping.||350MB||Download|
|cptac2_mouse_hcd_itraq_selected.tar.gz - Consensus library in NIST binary format. The folder generated by extracting this package can be used directly by MS Search or MSPepSearch and by the MSPepSearch node within Proteome Discoverer.||600MB||Download|
|20111201-RefSeq-Human-37-Mouse-37-Trypsin.fasta.tar.gz - FASTA file used to search CompRef human-mouse xenograft samples.||16.2MB||Download|
|md5_checklist.chk - MD5 hash file.||1KB||Download|