peptidew:lib:chicken_it

Chicken Ion Trap Library

May 24, 2011

The chicken egg yolk spectral library was generated from many dozens of runs at NIST Mass Spectrometry Data Center.
Reference: Mol Cell Proteomics. 2010 Feb;9(2):225-41. doi: 10.1074/mcp.M900223-MCP200. Performance metrics for liquid chromatography-tandem mass spectrometry systems in proteomics analyses. Rudnick PA, Clauser KR, Kilpatrick LE, Tchekhovskoi DV, Neta P, Blonder N, Billheimer DD, Blackman RK, Bunk DM, Cardasis HL, Ham AJ, Jaffe JD, Kinsinger CR, Mesri M, Neubert TA, Schilling B, Tabb DL, Tegeler TJ, Vega-Montoto L, Variyath AM, Wang M, Wang P, Whiteaker JR, Zimmerman LJ, Carr SA, Fisher SJ, Gibson BW, Paulovich AG, Regnier FE, Rodriguez H, Spiegelman C, Tempst P, Liebler DC, Stein SE.

File - Description Size Link
2011_05_24_chicken_consensus_final_true_lib.tar.gz - Consensus library in plain ASCII text (msp format). This format can be used as an exchange format. It is also directly readable by some software applications, including Skyline, after unzipping. 5MB Download
2011_05_24_chicken_nist.tar.gz - Consensus library in NIST binary format. The folder generated by extracting this package can be used directly by MS Search or MSPepSearch and by the MSPepSearch node within Proteome Discoverer. 11MB Download
2011_05_24_chicken_spectrast.tar.gz - Consensus library in SpectraST format. These library files can be directly searched by SpectraST after the package is extracted. 13MB Download
chicken_fasta.tar.gz - FASTA file used to create the library. 3.5MB Download
README.txt - Readme file. 4MB Download
md5_checklist.chk - MD5 hash file. 1KB Download
  • Total number of Spectra: 3,125
  • Unique Peptide Sequences: 1,798
  • Total Proteins in FASTA file used: 13,212
  • Proteome Coverage: 0.34%

© Copyright information
These peptide mass spectral libraries are protected by copyright law and may not be re-distributed without a valid Distribution Agreement. To receive such an agreement, contact the Standard Reference Data Program at the National Institute of Standards and Technology by emailing data@nist.gov or calling 301-975-2008.

peptidew/lib/chicken_it.txt · Last modified: 2015/07/08 15:30 (external edit)

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