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peptidew:lib:e_coli
E Coli Ion trap library
May 08, 2013
This library was assembled from data contributed by many laboratories. Each library entry contains annotation specifying its origin. Additionally, a summary table of the many contributors to this library, including references, can be downloaded here (Excel file).
The libraries in the msp and NIST binary formats were updated on July 25, 2018. Previous versions of these files are available on request.
| File - Description | Size | Link |
|---|---|---|
| 2013_05_08_e_coli_consensus_final_true_lib.tar.gz - Consensus library in plain ASCII text (msp format). This format can be used as an exchange format. It is also directly readable by some software applications, including Skyline, after unzipping. | 109MB | Download |
| 2013_05_08_e_coli_nist.tar.gz - Consensus library in NIST binary format. The folder generated by extracting this package can be used directly by MS Search or MSPepSearch and by the MSPepSearch node within Proteome Discoverer. | 211MB | Download |
| 2013_05_08_e_coli_spectrast.tar.gz - Consensus library in SpectraST format. These library files can be directly searched by SpectraST after the package is extracted. | 258MB | Download |
| e_coli_fasta.tar.gz - FASTA file used to create the library. | 3.5MB | Download |
| README.txt - Readme file. | 4MB | Download |
| md5_checklist.chk - MD5 hash file. | 1KB | Download |
- Total number of Spectra: 62,383
- Unique Peptide Sequences: 36,230
- Total Proteins in FASTA file used: 22,581
- Proteome Coverage: 15.83%
© Copyright information
These mass spectral libraries are protected by copyright law and may not be re-distributed without a valid Distribution Agreement. To receive such an agreement, contact the Standard Reference Data Program at the National Institute of Standards and Technology by emailing data@nist.gov or calling 301-975-2008.
peptidew/lib/e_coli.txt · Last modified: 2021/07/08 22:05 (external edit)
