Mouse HCD iTRAQ Library

Nov. 24, 2014

The mouse HCD iTRAQ-4 library was created entirely from raw data stored on the Clinical Proteomic Tumor Analysis Consortium (CPTAC) data portal Contributing laboratories were the Broad Institute, Johns Hopkins University and Pacific Northwest National Laboratory.

The libraries in the msp and NIST binary formats were updated on July 25, 2018. Previous versions of these files are available on request.

File - Description Size Link
cptac2_mouse_hcd_itraq_selected.msp.tar.gz - Consensus library in plain ASCII text (msp format). This format can be used as an exchange format. It is also directly readable by some software applications, including Skyline, after unzipping. 350MB Download
cptac2_mouse_hcd_itraq_selected.tar.gz - Consensus library in NIST binary format. The folder generated by extracting this package can be used directly by MS Search or MSPepSearch and by the MSPepSearch node within Proteome Discoverer. 600MB Download
20111201-RefSeq-Human-37-Mouse-37-Trypsin.fasta.tar.gz - FASTA file used to search CompRef human-mouse xenograft samples.16.2MBDownload
md5_checklist.chk - MD5 hash file. 1KB Download
  • Total number of Spectra: 91,068
  • Unique Peptide Sequences: 42,095
  • Total Proteins in FASTA file used: 62,417
peptidew/clib/mousehcditraqselected20141126.txt · Last modified: 2018/08/07 15:10 (external edit)

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